STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1896PFAM: CHRD domain containing protein; KEGG: pol:Bpro_3001 chordin. (156 aa)    
Predicted Functional Partners:
Pnap_1828
KEGG: bxe:Bxe_B0552 hypothetical protein.
  
     0.650
Pnap_1895
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pae:PA0355 protease PfpI.
       0.495
ku
Ku domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
       0.488
Pnap_2412
PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_2358 DsbA oxidoreductase.
  
    0.486
Pnap_0526
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.476
Pnap_2754
PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1841 cupin 2, conserved barrel.
  
     0.447
Pnap_0404
TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1048 hypothetical protein.
  
     0.435
Pnap_0405
TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein.
 
     0.432
Pnap_1897
PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rfr:Rfer_2734 radical SAM.
       0.416
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.