Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pnap_3165 | Pnap_3166 | Pnap_3165 | Pnap_3166 | PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold. | PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328; Belongs to the UPF0246 family. | 0.678 |
Pnap_3165 | Pnap_3167 | Pnap_3165 | Pnap_3167 | PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold. | KEGG: pol:Bpro_3277 hypothetical protein. | 0.403 |
Pnap_3165 | queF | Pnap_3165 | Pnap_3164 | PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold. | GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.766 |
Pnap_3166 | Pnap_3165 | Pnap_3166 | Pnap_3165 | PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328; Belongs to the UPF0246 family. | PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold. | 0.678 |
Pnap_3166 | Pnap_3167 | Pnap_3166 | Pnap_3167 | PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328; Belongs to the UPF0246 family. | KEGG: pol:Bpro_3277 hypothetical protein. | 0.535 |
Pnap_3166 | queF | Pnap_3166 | Pnap_3164 | PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328; Belongs to the UPF0246 family. | GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.662 |
Pnap_3167 | Pnap_3165 | Pnap_3167 | Pnap_3165 | KEGG: pol:Bpro_3277 hypothetical protein. | PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold. | 0.403 |
Pnap_3167 | Pnap_3166 | Pnap_3167 | Pnap_3166 | KEGG: pol:Bpro_3277 hypothetical protein. | PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328; Belongs to the UPF0246 family. | 0.535 |
queF | Pnap_3165 | Pnap_3164 | Pnap_3165 | GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold. | 0.766 |
queF | Pnap_3166 | Pnap_3164 | Pnap_3166 | GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328; Belongs to the UPF0246 family. | 0.662 |