STRINGSTRING
XP_008437055.1 protein (Cucumis melo) - STRING interaction network
"XP_008437055.1" - DNA mismatch repair protein MSH4 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437055.1DNA mismatch repair protein MSH4 (789 aa)    
Predicted Functional Partners:
XP_008463072.1
DNA mismatch repair protein MLH1 isoform X1 (737 aa)
 
 
  0.986
XP_008448458.1
DNA mismatch repair protein MLH3 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (1219 aa)
   
 
  0.982
XP_008458786.1
Probable ATP-dependent DNA helicase HFM1 isoform X1 (1164 aa)
     
 
  0.965
XP_008465877.1
Uncharacterized protein LOC103503464 isoform X4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1661 aa)
           
  0.950
XP_008451733.1
E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 (304 aa)
     
   
  0.935
XP_008450977.1
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination (340 aa)
   
 
  0.914
XP_008438613.1
Meiotic recombination protein DMC1 homolog; Belongs to the RecA family (345 aa)
   
 
  0.889
XP_008462989.1
Meiotic recombination protein SPO11-1 isoform X1 (386 aa)
     
 
  0.880
XP_008441145.1
Fanconi anemia group M protein isoform X1 (1329 aa)
     
 
  0.875
XP_008437337.1
Meiotic recombination protein SPO11-2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (384 aa)
     
 
  0.874
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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