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XP_008437097.1 protein (Cucumis melo) - STRING interaction network
"XP_008437097.1" - Uncharacterized protein LOC103482617 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437097.1Uncharacterized protein LOC103482617; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (440 aa)    
Predicted Functional Partners:
XP_008440431.1
DEAD-box ATP-dependent RNA helicase 16; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (595 aa)
     
 
  0.825
XP_008460737.1
DEAD-box ATP-dependent RNA helicase 13; Belongs to the DEAD box helicase family (1048 aa)
     
 
  0.804
XP_008463429.1
RNA helicase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns (734 aa)
     
   
  0.802
XP_008464470.1
Nucleolar protein 56-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 17 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (552 aa)
   
 
  0.792
XP_008451444.1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase (732 aa)
     
 
  0.789
XP_008460014.1
RNA helicase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (597 aa)
     
 
  0.784
XP_008453672.1
LOW QUALITY PROTEIN- putative DEAD-box ATP-dependent RNA helicase 29; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 2 bases in 2 codons (790 aa)
     
 
  0.778
XP_008462522.1
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (604 aa)
     
 
  0.773
XP_008455669.1
Probable nucleolar protein 5-2 (554 aa)
   
 
  0.771
XP_008454834.1
RNA helicase; DEAD-box ATP-dependent RNA helicase 18 (587 aa)
     
 
  0.765
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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