STRINGSTRING
XP_008437116.1 protein (Cucumis melo) - STRING interaction network
"XP_008437116.1" - Oxysterol-binding protein-related protein 2B-like in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437116.1Oxysterol-binding protein-related protein 2B-like (765 aa)    
Predicted Functional Partners:
XP_008453496.1
Uncharacterized protein LOC103494192 isoform X1 (535 aa)
           
  0.703
XP_008449985.1
UPF0496 protein At3g19330 isoform X1 (354 aa)
           
  0.703
XP_008441967.1
Extensin; Formin-like protein 20 (266 aa)
           
  0.625
XP_008439985.1
tRNA wybutosine-synthesizing protein 2/3/4 (1038 aa)
           
  0.607
XP_008464050.1
Uncharacterized protein LOC103502031 (567 aa)
           
  0.604
XP_008457651.1
Translocon-associated protein subunit alpha (260 aa)
           
  0.604
XP_008457381.1
Uncharacterized protein LOC103497089 (545 aa)
           
  0.604
XP_008447984.1
Translocon-associated protein subunit alpha-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 12 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (259 aa)
           
  0.604
XP_008458137.1
Vesicle-associated protein 1-3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 9 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns (238 aa)
       
 
  0.596
XP_008455504.1
Vesicle-associated protein 2-2 isoform X1 (429 aa)
       
 
  0.596
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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