STRINGSTRING
XP_008437171.1 protein (Cucumis melo) - STRING interaction network
"XP_008437171.1" - Sm-like protein LSM8 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437171.1Sm-like protein LSM8; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (98 aa)    
Predicted Functional Partners:
XP_008460221.1
U6 snRNA-associated Sm-like protein LSm6 (92 aa)
     
  0.999
XP_008454507.1
Sm-like protein LSM5; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns (140 aa)
     
  0.999
XP_008441520.1
U6 snRNA-associated Sm-like protein LSm3 (97 aa)
     
  0.999
XP_008463776.1
Probable small nuclear ribonucleoprotein F (87 aa)
     
 
  0.998
XP_008467086.1
U6 snRNA-associated Sm-like protein LSm7 (75 aa)
     
 
  0.998
XP_008452950.1
Small nuclear ribonucleoprotein Sm D3-like (132 aa)
     
 
  0.998
XP_008462580.1
Probable small nuclear ribonucleoprotein G (80 aa)
     
 
  0.998
XP_008452073.1
Small nuclear ribonucleoprotein Sm D2-like (107 aa)
     
 
  0.998
XP_008454659.1
Small nuclear ribonucleoprotein Sm D1-like (114 aa)
     
 
  0.998
XP_008461281.1
Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing (93 aa)
     
  0.996
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (7%) [HD]