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XP_008437218.1 protein (Cucumis melo) - STRING interaction network
"XP_008437218.1" - Protein HAPLESS 2 isoform X1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437218.1Protein HAPLESS 2 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (663 aa)    
Predicted Functional Partners:
XP_008450660.1
Nuclear transcription factor Y subunit C-9 (258 aa)
           
  0.853
XP_008459792.1
Myb-related protein 308-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (306 aa)
           
  0.821
XP_008436967.1
Uncharacterized protein LOC103482539 isoform X1 (542 aa)
           
  0.722
XP_008456236.1
The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 4 bases in 2 codons (588 aa)
           
  0.612
XP_008454365.1
Protein GAMETE EXPRESSED 1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (589 aa)
           
  0.612
XP_008455266.1
Nuclear transcription factor Y subunit C-2 (266 aa)
           
  0.582
XP_008451912.1
Ankyrin-3-like isoform X1; Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like (173 aa)
           
  0.580
XP_008460847.1
Protein SUPPRESSOR OF GENE SILENCING 3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (650 aa)
           
  0.570
XP_008456763.1
DNA replication licensing factor MCM5; Belongs to the MCM family (735 aa)
           
  0.570
XP_008448746.1
LOW QUALITY PROTEIN- regulator of nonsense transcripts 1 homolog; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (1268 aa)
           
  0.570
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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