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XP_008437290.1 protein (Cucumis melo) - STRING interaction network
"XP_008437290.1" - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase in Cucumis melo
Nodes:
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437290.1UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (779 aa)    
Predicted Functional Partners:
XP_008444042.1
phospho-N-acetylmuramoyl-pentapeptide- transferase homolog isoform X1 (521 aa)
 
   
  0.954
XP_008443835.1
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic (898 aa)
     
   
  0.832
XP_008439307.1
Uncharacterized protein At3g49140-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 8 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (528 aa)
     
   
  0.818
XP_008446250.1
Uncharacterized protein LOC103489037 (170 aa)
     
   
  0.768
XP_008439585.1
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 isoform X1; Uncharacterized protein LOC103484338 (533 aa)
     
   
  0.765
XP_008466336.1
Ribosomal RNA small subunit methyltransferase H; Probable methyltransferase-like protein 15 (443 aa)
 
   
  0.750
XP_008464459.1
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (727 aa)
     
   
  0.725
XP_008461957.1
Uncharacterized protein LOC103500410 (443 aa)
 
 
  0.723
XP_008438067.1
Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (601 aa)
     
   
  0.720
XP_008455984.1
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1; Uncharacterized protein LOC103496049 (169 aa)
     
   
  0.709
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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