STRINGSTRING
XP_008437308.1 protein (Cucumis melo) - STRING interaction network
"XP_008437308.1" - E3 ubiquitin-protein ligase At3g02290-like in Cucumis melo
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437308.1E3 ubiquitin-protein ligase At3g02290-like (212 aa)    
Predicted Functional Partners:
XP_008444359.1
Cullin-4; Belongs to the cullin family (829 aa)
     
   
  0.757
XP_008444061.1
DNA ligase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1405 aa)
     
   
  0.635
XP_008442217.1
ultraviolet-B receptor UVR8 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (419 aa)
       
 
  0.595
XP_008459453.1
Protein NSP-INTERACTING KINASE 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (626 aa)
           
  0.573
XP_008447802.1
Chaperone protein ClpD, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (959 aa)
     
   
  0.547
XP_008461596.1
Protein ABA DEFICIENT 4, chloroplastic isoform X2; Uncharacterized protein LOC103500161 (243 aa)
           
  0.545
XP_008460684.1
Peroxygenase isoform X1; Peroxygenase (239 aa)
           
  0.485
XP_008465988.1
Protein NSP-INTERACTING KINASE 2-like; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (623 aa)
           
  0.422
XP_008446507.1
Protein NSP-INTERACTING KINASE 1 isoform X1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (624 aa)
           
  0.422
XP_008459426.1
Proline-rich receptor-like protein kinase PERK8; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (772 aa)
       
 
  0.422
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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