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XP_008437313.1 protein (Cucumis melo) - STRING interaction network
"XP_008437313.1" - E3 ubiquitin-protein ligase RHA1B in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437313.1E3 ubiquitin-protein ligase RHA1B; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 7 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (185 aa)    
Predicted Functional Partners:
XP_008466651.1
Uncharacterized protein LOC103504007 (199 aa)
           
  0.630
XP_008450965.1
21 kDa protein (204 aa)
           
  0.628
XP_008451795.1
Uncharacterized protein LOC103492973 (81 aa)
           
  0.623
XP_008446579.1
ACD11 homolog protein; Ceramide-1-phosphate transfer protein (206 aa)
     
   
  0.617
XP_008461918.1
Uncharacterized protein LOC103500406; UPF0496 protein 4-like (394 aa)
           
  0.583
XP_008441509.1
UPF0496 protein 4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 6 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (391 aa)
           
  0.583
XP_008444676.1
RING finger protein 5 (230 aa)
           
  0.548
XP_008440158.1
E3 ubiquitin-protein ligase RNF185 (228 aa)
           
  0.548
XP_008461528.1
Uncharacterized protein LOC103500100 (844 aa)
           
  0.507
XP_008460266.1
The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- substituted 1 base at 1 genomic stop codon (713 aa)
           
  0.507
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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