STRINGSTRING
XP_008437337.1 protein (Cucumis melo) - STRING interaction network
"XP_008437337.1" - Meiotic recombination protein SPO11-2 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437337.1Meiotic recombination protein SPO11-2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (384 aa)    
Predicted Functional Partners:
TOP6B
DNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family (673 aa)
   
 
  0.974
XP_008446914.1
Crossover junction endonuclease MUS81 isoform X1 (649 aa)
     
 
  0.940
XP_008438613.1
Meiotic recombination protein DMC1 homolog; Belongs to the RecA family (345 aa)
     
 
  0.882
XP_008444325.1
Type 2 DNA topoisomerase 6 subunit B-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (504 aa)
       
 
  0.880
XP_008449115.1
DNA mismatch repair protein MSH5 isoform X1 (824 aa)
     
 
  0.875
XP_008437055.1
DNA mismatch repair protein MSH4 (789 aa)
     
 
  0.874
XP_008450896.1
WD repeat-containing protein VIP3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 10 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns (321 aa)
       
 
  0.873
XP_008447915.1
Serine/threonine-protein kinase ATR; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (2721 aa)
       
 
  0.827
XP_008459795.1
Probable serine/threonine-protein kinase cdc7 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (976 aa)
     
   
  0.822
XP_008464290.1
Uncharacterized protein LOC103502216 isoform X1 (245 aa)
           
  0.820
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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