STRINGSTRING
XP_008437378.1 protein (Cucumis melo) - STRING interaction network
"XP_008437378.1" - Protein SPA1-RELATED 2 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437378.1Protein SPA1-RELATED 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments (1058 aa)    
Predicted Functional Partners:
Cry1
Cryptochrome-1 isoform X1 (681 aa)
     
  0.952
Cry2
Cryptochrome-1 (633 aa)
     
  0.931
XP_008466392.1
Transcription factor HY5 (157 aa)
       
  0.895
bZIP2
Uncharacterized protein LOC103488299; Transcription factor HY5-like (158 aa)
       
  0.895
XP_008458987.1
E3 ubiquitin-protein ligase COP1-like (706 aa)
     
0.892
XP_008456402.1
E3 ubiquitin-protein ligase COP1 isoform X1 (675 aa)
     
0.891
XP_008447163.1
Eukaryotic translation initiation factor 2 subunit alpha (273 aa)
     
 
  0.827
XP_008466641.1
WD repeat-containing protein RUP2 (230 aa)
         
0.812
XP_008464802.1
Uncharacterized protein LOC103502603 isoform X1 (534 aa)
           
  0.747
XP_008438155.1
Proteasome subunit beta type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family (223 aa)
           
  0.740
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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