STRINGSTRING
XP_008437389.1 protein (Cucumis melo) - STRING interaction network
"XP_008437389.1" - Endoglucanase in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437389.1Endoglucanase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 10 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (624 aa)    
Predicted Functional Partners:
XP_008465403.1
DNA ligase; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (801 aa)
           
  0.485
XP_008451937.1
Uncharacterized protein LOC103493090; Cylicin-2 (376 aa)
           
  0.485
XP_008451168.1
DNA ligase 4 isoform X1 (1214 aa)
           
  0.485
XP_008444061.1
DNA ligase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1405 aa)
           
  0.485
XP_008460814.1
DNA-binding protein BIN4 isoform X1 (407 aa)
           
  0.483
XP_008457447.1
Transcriptional regulator TAC1-like (191 aa)
           
  0.480
XP_008458848.1
Pectate lyase-like (417 aa)
     
   
  0.459
XP_008458852.1
Uncharacterized membrane protein At3g27390-like (605 aa)
           
  0.422
XP_008450040.1
Uncharacterized membrane protein At3g27390; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (589 aa)
           
  0.422
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (8%) [HD]