STRINGSTRING
XP_008437429.1 protein (Cucumis melo) - STRING interaction network
"XP_008437429.1" - Transcription factor WER-like in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437429.1Transcription factor WER-like (263 aa)    
Predicted Functional Partners:
CISO
Prolycopene isomerase, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 6 ESTs, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (665 aa)
           
  0.753
XP_008437839.1
Transcription factor MYB1R1 (306 aa)
           
  0.614
XP_008464055.1
Transcription factor DIVARICATA isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (315 aa)
     
   
  0.612
XP_008465891.1
GATA transcription factor 26-like (541 aa)
       
 
  0.564
XP_008448782.1
GATA transcription factor 26-like isoform X1 (565 aa)
       
 
  0.564
XP_008453152.1
Transcription factor MYB1R1 (306 aa)
           
  0.528
XP_008464523.1
Histone deacetylase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns; Belongs to the histone deacetylase family. HD Type 1 subfamily (465 aa)
       
 
  0.486
XP_008458230.1
LOW QUALITY PROTEIN- transcription factor EGL1-like; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (644 aa)
       
 
  0.452
XP_008466300.1
Probable WRKY transcription factor 11; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 8 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns (350 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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