STRINGSTRING
XP_008437439.1 protein (Cucumis melo) - STRING interaction network
"XP_008437439.1" - UPF0160 protein-like in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437439.1UPF0160 protein-like (370 aa)    
Predicted Functional Partners:
XP_008460241.1
Ribosome biogenesis protein BRX1 homolog (101 aa)
     
   
  0.888
XP_008456708.1
Ribosome biogenesis protein BRX1 homolog (78 aa)
     
   
  0.888
XP_008450669.1
Ribosome biogenesis protein BRX1-like (316 aa)
     
   
  0.888
XP_008461974.1
Bystin isoform X1; Bystin (442 aa)
     
        0.866
XP_008454886.1
H/ACA ribonucleoprotein complex subunit 2-like protein (159 aa)
     
        0.865
XP_008454040.1
54S ribosomal protein L51, mitochondrial; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns (119 aa)
     
        0.863
XP_008460096.1
50S ribosomal protein L3, chloroplastic; Belongs to the universal ribosomal protein uL3 family (293 aa)
     
        0.860
XP_008438999.1
50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family (328 aa)
     
        0.860
XP_008456000.1
Rhodanese-like domain-containing protein 14, chloroplastic (237 aa)
           
  0.855
XP_008447241.1
Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine, an essential post- translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family (320 aa)
   
        0.743
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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