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XP_008437538.1 protein (Cucumis melo) - STRING interaction network
"XP_008437538.1" - 60S ribosomal protein L9 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437538.160S ribosomal protein L9; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 21 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns (194 aa)    
Predicted Functional Partners:
XP_008463090.1
60S ribosomal protein L3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 46 ESTs, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns; Belongs to the universal ribosomal protein uL3 family (389 aa)
 
 
  0.994
XP_008445969.1
60S ribosomal protein L3-2; Belongs to the universal ribosomal protein uL3 family (388 aa)
 
 
  0.993
XP_008457380.1
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (320 aa)
 
 
  0.993
XP_008463223.1
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (320 aa)
 
 
  0.993
XP_008440805.1
60S ribosomal protein L8-3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 19 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns (260 aa)
 
 
  0.993
XP_008454581.1
60S ribosomal protein L8 (260 aa)
 
 
  0.993
XP_008449248.1
60S ribosomal protein L12-1; Belongs to the universal ribosomal protein uL11 family (166 aa)
 
 
  0.992
XP_008442680.1
60S ribosomal protein L12-1 (166 aa)
 
 
  0.992
XP_008452010.1
40S ribosomal protein S10-1-like (182 aa)
     
 
  0.992
XP_008465194.1
40S ribosomal protein S15-4-like; Belongs to the universal ribosomal protein uS19 family (153 aa)
 
 
  0.992
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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