STRINGSTRING
XP_008437619.1 protein (Cucumis melo) - STRING interaction network
"XP_008437619.1" - ATPase family AAA domain-containing protein 1-like in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437619.1ATPase family AAA domain-containing protein 1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns; Belongs to the AAA ATPase family (392 aa)    
Predicted Functional Partners:
XP_008456569.1
Uncharacterized protein LOC103496485 (132 aa)
           
  0.580
XP_008463609.1
NADH-ubiquinone oxidoreductase 20.9 kDa subunit; Uncharacterized protein LOC103501718 (100 aa)
           
  0.573
XP_008457941.1
Uncharacterized protein LOC103497503; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 6 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns (76 aa)
           
  0.573
XP_008466423.1
E3 ubiquitin-protein ligase KEG (626 aa)
           
  0.556
XP_008438378.1
Chromosome transmission fidelity protein 18 homolog (972 aa)
     
   
  0.487
XP_008437660.1
NPL4-like protein 1 (411 aa)
     
 
  0.470
XP_008443369.1
Probable ubiquitin conjugation factor E4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 10 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (1043 aa)
   
 
  0.428
XP_008451858.1
Myosin-9; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 mRNAs, 6 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (1582 aa)
           
  0.422
XP_008464695.1
Uncharacterized protein LOC103502517 isoform X1; Vacuolar fusion protein CCZ1 homolog (417 aa)
     
   
  0.421
XP_008466025.1
Transcription factor IWS1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 10 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (509 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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