Groups of genes that are frequently observed in each other's genomic neighborhood.
Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.
Genes that are sometimes fused into single open reading frames.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Auxin-induced protein X15 (120 aa)
Predicted Functional Partners:
NAC domain-containing protein 100-like (330 aa)
Uncharacterized protein LOC103487659 (153 aa)
Multiprotein-bridging factor 1c (212 aa)
Protein DMR6-LIKE OXYGENASE 1; 2’-deoxymugineic-acid 2’-dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family (374 aa)
Auxin transporter-like protein 2 isoform X1 (492 aa)
Auxin transporter-like protein 2 (493 aa)
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (732 aa)
Uncharacterized protein LOC103504558 (139 aa)
Vesicle-associated membrane protein 714; Belongs to the synaptobrevin family (220 aa)
CDPK-related kinase 3 isoform X1 (609 aa)
Your Current Organism:
NCBI taxonomy Id: 3656 Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon