STRINGSTRING
XP_008437660.1 protein (Cucumis melo) - STRING interaction network
"XP_008437660.1" - NPL4-like protein 1 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437660.1NPL4-like protein 1 (411 aa)    
Predicted Functional Partners:
XP_008461020.1
Ubiquitin fusion degradation protein 1 homolog isoform X1 (321 aa)
     
  0.988
XP_008448046.1
Ubiquitin fusion degradation protein 1 homolog isoform X3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 7 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments (321 aa)
     
  0.988
XP_008444838.1
Ubiquitin fusion degradation protein 1 homolog isoform X1 (321 aa)
     
  0.988
XP_008464542.1
Cell division cycle protein 48 homolog; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (819 aa)
     
  0.982
XP_008462466.1
Cell division cycle protein 48 homolog (807 aa)
     
  0.982
XP_008442694.1
Cell division control protein 48 homolog E; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 7 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (804 aa)
     
  0.982
XP_008443369.1
Probable ubiquitin conjugation factor E4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 10 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (1043 aa)
     
 
  0.964
XP_008454875.1
Phospholipase A-2-activating protein (757 aa)
     
 
  0.963
XP_008456878.1
UBX domain-containing protein 2 (450 aa)
       
 
  0.961
XP_008447742.1
Ubiquitin thioesterase OTU1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns (208 aa)
     
 
  0.955
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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