STRINGSTRING
XP_008437692.1 protein (Cucumis melo) - STRING interaction network
"XP_008437692.1" - RNA-dependent RNA polymerase in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437692.1RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (938 aa)    
Predicted Functional Partners:
XP_008454834.1
RNA helicase; DEAD-box ATP-dependent RNA helicase 18 (587 aa)
           
  0.783
XP_008443670.1
Endoribonuclease Dicer homolog 2 isoform X1; Belongs to the helicase family. Dicer subfamily (1393 aa)
     
 
  0.727
XP_008443887.1
Dicer-like protein 4 isoform X1; Belongs to the helicase family. Dicer subfamily (1653 aa)
     
 
  0.726
XP_008463429.1
RNA helicase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns (734 aa)
           
  0.703
XP_008466557.1
RNA helicase; DEAD-box ATP-dependent RNA helicase 51-like (616 aa)
           
  0.701
XP_008455594.1
RNA helicase; DEAD-box ATP-dependent RNA helicase 51 (611 aa)
           
  0.701
XP_008445598.1
Endoribonuclease Dicer homolog 3; Belongs to the helicase family. Dicer subfamily (1645 aa)
     
 
  0.699
XP_008460014.1
RNA helicase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (597 aa)
           
  0.691
EIF4E
Eukaryotic translation initiation factor 4E-1 (235 aa)
     
   
  0.638
XP_008437750.1
Endoribonuclease Dicer homolog 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns; Belongs to the helicase family. Dicer subfamily (1990 aa)
     
 
  0.638
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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