STRINGSTRING
XP_008437739.1 protein (Cucumis melo) - STRING interaction network
"XP_008437739.1" - pre-mRNA-splicing factor SF2 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437739.1pre-mRNA-splicing factor SF2 (229 aa)    
Predicted Functional Partners:
XP_008445803.1
Serine/arginine-rich splicing factor RS2Z32-like isoform X1 (337 aa)
     
 
  0.930
XP_008455209.1
Serine/arginine-rich splicing factor 2 isoform X1 (283 aa)
     
 
  0.924
XP_008445340.1
Serine/arginine-rich splicing factor 2-like (251 aa)
     
 
  0.924
XP_008440701.1
U1 small nuclear ribonucleoprotein 70 kDa (505 aa)
     
 
  0.900
XP_008439055.1
U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns (333 aa)
     
 
  0.882
XP_008446226.1
Serine/arginine-rich splicing factor RSZ21 (187 aa)
     
 
0.864
XP_008450386.1
RNA-binding protein 8A-B (197 aa)
     
 
  0.858
XP_008466294.1
Serine/arginine-rich splicing factor RSZ22A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 10 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (186 aa)
     
 
0.855
XP_008445205.1
DEAD-box ATP-dependent RNA helicase 56 (427 aa)
   
 
  0.811
XP_008449100.1
Serine/arginine-rich splicing factor RS40-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (378 aa)
     
 
  0.807
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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