STRINGSTRING
XP_008437758.1 protein (Cucumis melo) - STRING interaction network
"XP_008437758.1" - LOW QUALITY PROTEIN: transcription factor 25 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437758.1LOW QUALITY PROTEIN- transcription factor 25; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 2 bases in 2 codons (642 aa)    
Predicted Functional Partners:
XP_008440152.1
E3 ubiquitin-protein ligase RKP isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (1293 aa)
           
  0.888
XP_008458314.1
Nuclear export mediator factor Nemf (1119 aa)
     
 
  0.878
XP_008457305.1
E3 ubiquitin-protein ligase listerin isoform X1 (1903 aa)
     
 
  0.876
XP_008466320.1
HBS1-like protein isoform X1 (782 aa)
     
   
  0.740
XP_008437660.1
NPL4-like protein 1 (411 aa)
     
 
  0.655
XP_008439666.1
DNA-binding protein DDB_G0278111 (128 aa)
     
   
  0.632
XP_008463606.1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 9 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (691 aa)
           
  0.631
XP_008444234.1
ABC transporter E family member 2 (605 aa)
           
  0.629
XP_008441763.1
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (386 aa)
           
  0.629
XP_008441969.1
Heterogeneous nuclear ribonucleoprotein U-like protein 1 (597 aa)
           
  0.589
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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