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XP_008437779.1 protein (Cucumis melo) - STRING interaction network
"XP_008437779.1" - 60S acidic ribosomal protein P1-like in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437779.160S acidic ribosomal protein P1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 229 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns; Belongs to the eukaryotic ribosomal protein P1/P2 family (113 aa)    
Predicted Functional Partners:
XP_008462549.1
60S acidic ribosomal protein P2-like isoform X1; Belongs to the eukaryotic ribosomal protein P1/P2 family (118 aa)
     
  0.997
XP_008446770.1
60S acidic ribosomal protein P2-4-like; Belongs to the eukaryotic ribosomal protein P1/P2 family (114 aa)
     
0.995
XP_008458601.1
60S acidic ribosomal protein P2B-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 112 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns; Belongs to the eukaryotic ribosomal protein P1/P2 family (115 aa)
     
0.995
XP_008443016.1
60S ribosomal protein L21-1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 40 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (164 aa)
     
 
  0.992
XP_008465377.1
40S ribosomal protein S27-2-like (86 aa)
     
 
  0.991
XP_008457380.1
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (320 aa)
   
 
  0.990
XP_008449248.1
60S ribosomal protein L12-1; Belongs to the universal ribosomal protein uL11 family (166 aa)
   
 
  0.990
XP_008442680.1
60S ribosomal protein L12-1 (166 aa)
   
 
  0.990
XP_008459377.1
40S ribosomal protein S19-3 (143 aa)
   
 
  0.989
XP_008451369.1
40S ribosomal protein S19-3-like (143 aa)
   
 
  0.989
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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