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XP_008437787.1 protein (Cucumis melo) - STRING interaction network
"XP_008437787.1" - CCR4-NOT transcription complex subunit 1 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437787.1CCR4-NOT transcription complex subunit 1 (2381 aa)    
Predicted Functional Partners:
XP_008438061.1
DEAD-box ATP-dependent RNA helicase 8; Belongs to the DEAD box helicase family (492 aa)
     
 
  0.955
XP_008465329.1
General negative regulator of transcription subunit 3 (904 aa)
     
 
  0.955
XP_008460852.1
CCR4-NOT transcription complex subunit 11 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (449 aa)
     
 
  0.940
XP_008455454.1
Cell differentiation protein rcd1 isoform X1 (301 aa)
     
 
  0.936
XP_008447722.1
Cell differentiation protein RCD1 homolog; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (319 aa)
     
 
  0.936
XP_008457784.1
Probable NOT transcription complex subunit VIP2 isoform X1 (660 aa)
     
 
  0.934
XP_008448344.1
Probable NOT transcription complex subunit VIP2 isoform X1 (715 aa)
     
 
  0.934
XP_008443951.1
CCR4-NOT transcription complex subunit 10; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 mRNAs, 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (853 aa)
     
 
  0.934
XP_008463873.1
Uncharacterized protein LOC103501902 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (1097 aa)
     
 
  0.929
XP_008453149.1
Uncharacterized protein LOC103493947 (349 aa)
     
 
  0.929
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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