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XP_008437806.1 protein (Cucumis melo) - STRING interaction network
"XP_008437806.1" - E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437806.1E3 ubiquitin-protein ligase BRE1-like 1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 5 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (878 aa)    
Predicted Functional Partners:
XP_008446323.1
Ubiquitin-conjugating enzyme E2 2-like; Belongs to the ubiquitin-conjugating enzyme family (152 aa)
     
 
  0.927
XP_008446322.1
Ubiquitin-conjugating enzyme E2 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 139 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns; Belongs to the ubiquitin-conjugating enzyme family (152 aa)
     
 
  0.927
XP_008462762.1
Helicase protein MOM1 (2546 aa)
     
 
  0.839
XP_008459339.1
SPX domain-containing protein 4 (328 aa)
     
 
  0.796
XP_008466422.1
Putative leucine-rich repeat-containing protein DDB_G0290503; Putative golgin subfamily A member 6-like protein 6 (782 aa)
       
      0.791
XP_008464081.1
Tropomyosin; Synaptonemal complex protein 1 isoform X1 (437 aa)
       
      0.791
XP_008463108.1
Conserved oligomeric Golgi complex subunit 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (754 aa)
       
      0.791
XP_008461097.1
Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments (86 aa)
       
      0.791
XP_008456411.1
AUGMIN subunit 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (301 aa)
       
      0.791
XP_008455132.1
Pentatricopeptide repeat-containing protein At5g09450, mitochondrial isoform X1 (409 aa)
       
      0.791
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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