STRINGSTRING
XP_008437827.1 protein (Cucumis melo) - STRING interaction network
"XP_008437827.1" - Polynucleotide 5'-hydroxyl-kinase NOL9 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437827.1Polynucleotide 5’-hydroxyl-kinase NOL9; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (379 aa)    
Predicted Functional Partners:
XP_008449642.1
pre-rRNA-processing protein las1 (607 aa)
     
 
  0.991
XP_008443256.1
Uncharacterized protein LOC103486885 isoform X1 (692 aa)
     
 
  0.961
XP_008449720.1
Mitochondrial tRNA-specific 2-thiouridylase 1 (539 aa)
     
   
  0.961
XP_008452567.1
Protein ROOT INITIATION DEFECTIVE 3 (447 aa)
     
 
  0.932
XP_008451730.1
Protein ROOT INITIATION DEFECTIVE 3-like (441 aa)
     
 
  0.932
XP_008439557.1
Protein ROOT INITIATION DEFECTIVE 3-like isoform X1 (365 aa)
     
 
  0.932
XP_008465900.1
Decapping nuclease DXO homolog, chloroplastic isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 7 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (524 aa)
       
 
  0.799
XP_008454272.1
Periodic tryptophan protein 2 homolog (892 aa)
     
   
  0.742
XP_008465734.1
5’-3’ exoribonuclease 3 isoform X1 (1109 aa)
     
 
  0.729
XP_008455748.1
LOW QUALITY PROTEIN- 5’-3’ exoribonuclease 4; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 1 base in 1 codon (963 aa)
     
 
  0.729
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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