STRINGSTRING
XP_008437829.1 protein (Cucumis melo) - STRING interaction network
"XP_008437829.1" - Heterogeneous nuclear ribonucleoprotein R isoform X1 in Cucumis melo
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437829.1Heterogeneous nuclear ribonucleoprotein R isoform X1 (483 aa)    
Predicted Functional Partners:
XP_008460094.1
Chromo domain-containing protein LHP1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 3 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (454 aa)
     
 
  0.822
XP_008438194.1
Chromo domain protein LHP1-like (409 aa)
     
 
  0.822
XP_008461655.1
Serine/arginine-rich SC35-like splicing factor SCL30; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns (280 aa)
     
 
  0.661
XP_008440306.1
Protein WHI4 (316 aa)
     
 
  0.571
XP_008452950.1
Small nuclear ribonucleoprotein Sm D3-like (132 aa)
     
 
  0.540
XP_008461126.1
pre-mRNA-processing-splicing factor 8-like (2347 aa)
     
 
  0.532
XP_008439504.1
Small nuclear ribonucleoprotein-associated proteins B and B’-like (284 aa)
     
 
  0.530
XP_008453098.1
E3 ubiquitin-protein ligase SIS3-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 8 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (377 aa)
           
  0.465
XP_008438310.1
E3 ubiquitin-protein ligase SIS3-like isoform X1 (350 aa)
           
  0.465
XP_008450538.1
NHL repeat-containing protein 2 (1082 aa)
       
 
  0.453
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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