STRINGSTRING
XP_008437922.1 protein (Cucumis melo) - STRING interaction network
"XP_008437922.1" - Uncharacterized protein At5g05190 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437922.1Uncharacterized protein At5g05190 (909 aa)    
Predicted Functional Partners:
XP_008462752.1
Transmembrane protein 234 homolog (123 aa)
           
  0.619
XP_008456269.1
ABC transporter D family member 2, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (774 aa)
           
  0.619
XP_008441761.1
LOW QUALITY PROTEIN- DNA-directed RNA polymerases II, IV and V subunit 3-like; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (320 aa)
           
  0.619
XP_008438878.1
CAP-Gly domain-containing linker protein 1 isoform X1 (151 aa)
           
  0.619
XP_008462228.1
RNA-binding protein with multiple splicing (335 aa)
       
      0.586
XP_008460218.1
Transcription factor bHLH111; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns (448 aa)
       
      0.586
XP_008456199.1
Transcription repressor KAN1-like isoform X1 (335 aa)
       
      0.586
XP_008455026.1
E3 ubiquitin-protein ligase RLIM (262 aa)
       
      0.586
XP_008442633.1
Floral homeotic protein APETALA 2-like (482 aa)
       
      0.586
XP_008448599.1
Protein BREVIS RADIX (361 aa)
       
      0.518
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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