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XP_008437927.1 protein (Cucumis melo) - STRING interaction network
"XP_008437927.1" - F-box/kelch-repeat protein At3g61590 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008437927.1F-box/kelch-repeat protein At3g61590 (405 aa)    
Predicted Functional Partners:
XP_008465984.1
Transcription factor bHLH71 (316 aa)
           
  0.763
XP_008459727.1
Transcription factor UNE10 (490 aa)
           
  0.760
XP_008438368.1
Transcription factor FAMA (417 aa)
           
  0.740
XP_008465382.1
Transcription factor SPEECHLESS (377 aa)
           
  0.737
XP_008448085.1
Transcription factor bHLH49-like; Uncharacterized protein LOC103490373 (626 aa)
           
  0.711
XP_008453195.1
Transcription factor bHLH47; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (253 aa)
           
  0.698
XP_008461158.1
BRCA1-associated protein isoform X1 (507 aa)
           
  0.615
XP_008438719.1
Transcription factor MUTE (190 aa)
           
  0.604
XP_008441476.1
Transcription factor bHLH51; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns (246 aa)
           
  0.483
XP_008437066.1
Probable aquaporin TIP2-2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 17 ESTs, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns; Belongs to the MIP/aquaporin (TC 1.A.8) family (250 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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