STRINGSTRING
XP_008438002.1 protein (Cucumis melo) - STRING interaction network
"XP_008438002.1" - Uncharacterized protein LOC103483249 isoform X1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
XP_008438002.1Uncharacterized protein LOC103483249 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 8 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1055 aa)    
Predicted Functional Partners:
XP_008462762.1
Helicase protein MOM1 (2546 aa)
     
        0.866
XP_008466662.1
LOW QUALITY PROTEIN- protein KAKU4; Dentin sialophosphoprotein (533 aa)
     
        0.861
XP_008443422.1
3-dehydroquinate synthase homolog; Uncharacterized protein LOC103487013 (423 aa)
           
  0.855
XP_008448531.1
3-dehydroquinate synthase, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 14 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (452 aa)
           
  0.760
XP_008449672.1
chromodomain-helicase-DNA-binding protein 1 isoform X1 (1760 aa)
     
        0.705
XP_008438175.1
3-phosphoshikimate 1-carboxyvinyltransferase 2; Belongs to the EPSP synthase family (526 aa)
           
  0.704
XP_008450643.1
Uncharacterized protein LOC103492170 (473 aa)
           
  0.587
XP_008454394.1
Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 16 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (477 aa)
           
  0.485
XP_008446490.1
Protein PHYLLO, chloroplastic isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (1733 aa)
           
  0.485
XP_008456230.1
Flowering locus K homology domain isoform X1; poly(rC)-binding protein 3 isoform X1 (483 aa)
     
        0.426
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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