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XP_008438004.1 protein (Cucumis melo) - STRING interaction network
"XP_008438004.1" - 50S ribosomal protein L5, chloroplastic in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438004.150S ribosomal protein L5, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns (271 aa)    
Predicted Functional Partners:
XP_008441337.1
50S ribosomal protein L27, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (183 aa)
     
 
  0.993
XP_008466625.1
30S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family (204 aa)
 
 
  0.989
XP_008464035.1
Uncharacterized protein LOC103502018; Belongs to the bacterial ribosomal protein bS18 family (273 aa)
     
 
  0.988
XP_008437516.1
28S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family (405 aa)
 
 
  0.988
XP_008462167.1
30S ribosomal protein S17, chloroplastic; Belongs to the universal ribosomal protein uS17 family (164 aa)
   
 
  0.987
XP_008460096.1
50S ribosomal protein L3, chloroplastic; Belongs to the universal ribosomal protein uL3 family (293 aa)
 
 
  0.987
XP_008462962.1
30S ribosomal protein S10, chloroplastic (269 aa)
 
 
  0.987
XP_008455431.1
50S ribosomal protein L6, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 9 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns; Belongs to the universal ribosomal protein uL6 family (233 aa)
 
 
  0.986
XP_008463780.1
50S ribosomal protein L13, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns; Belongs to the universal ribosomal protein uL13 family (248 aa)
 
 
  0.986
XP_008440709.1
60S ribosomal protein L6, mitochondrial; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments; Belongs to the universal ribosomal protein uL6 family (102 aa)
 
 
  0.986
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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