STRINGSTRING
XP_008438045.1 protein (Cucumis melo) - STRING interaction network
"XP_008438045.1" - Protein PAIR1 isoform X1 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438045.1Protein PAIR1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (411 aa)    
Predicted Functional Partners:
XP_008464335.1
Protein PRD1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (1275 aa)
           
  0.955
XP_008452708.1
Uncharacterized protein LOC103493647 isoform X1 (404 aa)
           
  0.953
XP_008464290.1
Uncharacterized protein LOC103502216 isoform X1 (245 aa)
           
  0.854
XP_008448303.1
Uncharacterized protein LOC103490538 isoform X1 (795 aa)
           
  0.854
XP_008444449.1
HORMA domain-containing protein 1 (601 aa)
           
  0.854
XP_008452425.1
cyclin-SDS-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns; Belongs to the cyclin family (577 aa)
           
  0.851
XP_008462989.1
Meiotic recombination protein SPO11-1 isoform X1 (386 aa)
           
  0.850
XP_008444198.1
DNA topoisomerase 2-binding protein 1 isoform X1 (973 aa)
           
  0.800
XP_008438613.1
Meiotic recombination protein DMC1 homolog; Belongs to the RecA family (345 aa)
           
  0.763
XP_008466037.1
Synaptonemal complex protein 1-like (875 aa)
           
  0.755
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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