STRINGSTRING
XP_008438050.1 protein (Cucumis melo) - STRING interaction network
"XP_008438050.1" - Uncharacterized protein LOC103483273 isoform X1 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
XP_008438050.1Uncharacterized protein LOC103483273 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (933 aa)    
Predicted Functional Partners:
XP_008449361.1
Protein LONGIFOLIA 1 (802 aa)
           
  0.728
XP_008444260.1
Alkylated DNA repair protein alkB homolog 8 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (342 aa)
           
  0.720
XP_008441246.1
Alkylated DNA repair protein alkB homolog 8 (391 aa)
           
  0.704
XP_008451330.1
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit; Belongs to the WD repeat TRM82 family (431 aa)
           
  0.658
XP_008458381.1
Uncharacterized protein LOC103497806; Probable GPI-anchored adhesin-like protein PGA55 (935 aa)
           
  0.629
XP_008439985.1
tRNA wybutosine-synthesizing protein 2/3/4 (1038 aa)
           
  0.626
XP_008453286.1
Protein LONGIFOLIA 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns (1047 aa)
           
  0.604
XP_008451513.1
Protein LONGIFOLIA 1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (1067 aa)
           
  0.604
CTU1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position (358 aa)
           
  0.588
XP_008459386.1
Protein LONGIFOLIA 2 (1044 aa)
           
  0.574
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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