STRINGSTRING
XP_008438064.1 protein (Cucumis melo) - STRING interaction network
"XP_008438064.1" - pre-mRNA cleavage factor Im 25 kDa subunit 2 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438064.1pre-mRNA cleavage factor Im 25 kDa subunit 2; Cleavage and polyadenylation specificity factor subunit 5 (200 aa)    
Predicted Functional Partners:
XP_008443875.1
FIP1[V]-like protein isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 mRNAs, 7 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (1397 aa)
     
 
  0.995
XP_008459517.1
30-kDa cleavage and polyadenylation specificity factor 30-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (708 aa)
     
 
  0.991
XP_008445183.1
30-kDa cleavage and polyadenylation specificity factor 30; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns (710 aa)
     
 
  0.991
XP_008446776.1
Cell division control protein 2 homolog A; Belongs to the protein kinase superfamily (294 aa)
     
      0.973
XP_008464918.1
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
     
      0.973
XP_008440562.1
cyclin-D4-1-like isoform X1; Belongs to the cyclin family (368 aa)
       
      0.864
XP_008444223.1
Uncharacterized protein LOC103487622 isoform X1 (951 aa)
     
 
  0.845
XP_008452613.1
Putative cyclin-A3-1; Belongs to the cyclin family (377 aa)
       
      0.816
XP_008444589.1
cyclin-A3-2-like; Belongs to the cyclin family (373 aa)
       
      0.816
XP_008462960.1
Polyadenylation and cleavage factor homolog 4 isoform X1; Uncharacterized protein LOC103501218 isoform X1 (1012 aa)
     
 
  0.813
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (7%) [HD]