STRINGSTRING
XP_008438068.1 protein (Cucumis melo) - STRING interaction network
"XP_008438068.1" - LIM domain-containing protein PLIM2b-like in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438068.1LIM domain-containing protein PLIM2b-like; Pollen-specific protein SF3-like (205 aa)    
Predicted Functional Partners:
XP_008459496.1
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial (669 aa)
           
  0.583
XP_008454129.1
Uncharacterized protein LOC103494624 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (1010 aa)
           
  0.575
XP_008438065.1
Uncharacterized protein LOC103483286 (633 aa)
           
  0.561
XP_008443234.1
Cytochrome P450 98A2 (508 aa)
           
  0.549
XP_008449568.1
Protein phosphatase 2C 70 isoform X1 (583 aa)
           
  0.480
XP_008461740.1
Protein DA1-related 2 (468 aa)
     
 
  0.453
XP_008451182.1
Cellulose synthase-like protein D4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1122 aa)
           
  0.420
XP_008443083.1
LOW QUALITY PROTEIN- 3,9-dihydroxypterocarpan 6A-monooxygenase; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 2 bases in 1 codon; Belongs to the cytochrome P450 family (535 aa)
           
  0.420
XP_008458103.1
NAC domain-containing protein 21/22-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (254 aa)
           
  0.420
XP_008451083.1
Short-chain dehydrogenase/reductase 2b-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns; Belongs to the short-chain dehydrogenases/reductases (SDR) family (305 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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