STRINGSTRING
XP_008438070.1 protein (Cucumis melo) - STRING interaction network
"XP_008438070.1" - Putative DNA glycosylase At3g47830 in Cucumis melo
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
XP_008438070.1Putative DNA glycosylase At3g47830; DEMETER-like protein 2 (307 aa)    
Predicted Functional Partners:
XP_008454182.1
formamidopyrimidine-DNA glycosylase isoform X1 (402 aa)
         
  0.817
NTH1
Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines (386 aa)
         
    0.800
XP_008463743.1
Polynucleotide 3’-phosphatase ZDP; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns (391 aa)
       
 
  0.639
XP_008439958.1
tyrosyl-DNA phosphodiesterase 1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (646 aa)
           
  0.570
XP_008442389.1
Transcription factor bHLH140 (747 aa)
       
 
  0.533
XP_008446253.1
DNA polymerase beta isoform X1 (521 aa)
         
  0.432
XP_008453982.1
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (297 aa)
   
   
  0.421
XP_008459934.1
A/G-specific adenine DNA glycosylase (464 aa)
   
   
  0.407
XP_008444061.1
DNA ligase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1405 aa)
   
   
  0.406
XP_008462692.1
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 (1083 aa)
         
  0.405
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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