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XP_008438121.1 protein (Cucumis melo) - STRING interaction network
"XP_008438121.1" - Histone deacetylase complex subunit SAP18 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438121.1Histone deacetylase complex subunit SAP18; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (148 aa)    
Predicted Functional Partners:
XP_008453771.1
Apoptotic chromatin condensation inducer in the nucleus (742 aa)
     
  0.986
XP_008457549.1
THO complex subunit 4A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns (245 aa)
     
 
  0.858
XP_008457020.1
THO complex subunit 4D isoform X1 (285 aa)
     
 
  0.858
XP_008448383.1
THO complex subunit 4A-like isoform X1 (237 aa)
     
 
  0.858
XP_008465435.1
Serine/arginine-rich splicing factor SR45; Arginine/serine-rich protein 45 (419 aa)
     
    0.822
XP_008448944.1
Histone deacetylase complex subunit SAP18-like (166 aa)
         
 
0.800
XP_008443431.1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (642 aa)
     
 
  0.792
XP_008437772.1
Protein mago nashi homolog (152 aa)
     
 
  0.717
XP_008463776.1
Probable small nuclear ribonucleoprotein F (87 aa)
     
        0.709
XP_008442980.1
Suppressor of mec-8 and unc-52 protein homolog 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (561 aa)
       
      0.694
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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