STRINGSTRING
XP_008438186.1 protein (Cucumis melo) - STRING interaction network
"XP_008438186.1" - IRK-interacting protein in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438186.1IRK-interacting protein; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 10 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (422 aa)    
Predicted Functional Partners:
XP_008462213.1
alpha-1,2-Mannosidase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns; Belongs to the glycosyl hydrolase 47 family (578 aa)
           
  0.847
XP_008454932.1
Uncharacterized protein LOC103495226 isoform X1 (344 aa)
           
  0.847
XP_008450521.1
Zinc finger CCCH domain-containing protein 3 (157 aa)
           
  0.847
XP_008446282.1
Uncharacterized protein LOC103489059 (214 aa)
           
  0.847
XP_008441871.1
TATA box-binding protein-associated factor RNA polymerase I subunit B; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns (737 aa)
           
  0.847
XP_008439412.1
Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (320 aa)
           
  0.846
XP_008454929.1
Uncharacterized protein LOC103495224 (254 aa)
           
  0.725
XP_008437737.1
Bidirectional sugar transporter SWEET; Mediates both low-affinity uptake and efflux of sugar across the membrane (249 aa)
           
  0.628
XP_008464722.1
Uncharacterized protein LOC103502541 isoform X1 (1153 aa)
           
  0.595
XP_008451425.1
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (197 aa)
           
  0.595
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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