STRINGSTRING
XP_008438194.1 protein (Cucumis melo) - STRING interaction network
"XP_008438194.1" - Chromo domain protein LHP1-like in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438194.1Chromo domain protein LHP1-like (409 aa)    
Predicted Functional Partners:
XP_008457764.1
DNA polymerase alpha catalytic subunit (1548 aa)
     
 
  0.944
XP_008438779.1
Chromatin structure-remodeling complex protein SYD isoform X1 (3309 aa)
     
 
  0.875
XP_008440173.1
Histone-lysine N-methyltransferase SUVR5 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns (1493 aa)
       
 
  0.872
XP_008453856.1
Polycomb group protein EMBRYONIC FLOWER 2 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns (639 aa)
       
 
  0.867
XP_008448794.1
Polycomb group protein EMBRYONIC FLOWER 2 (433 aa)
       
 
  0.858
XP_008447608.1
Probable histone H2A.4 (153 aa)
     
 
  0.842
XP_008462762.1
Helicase protein MOM1 (2546 aa)
     
 
  0.838
XP_008461705.1
Peptidyl-prolyl cis-trans isomerase CYP71; Peptidylprolyl isomerase domain and WD repeat-containing protein 1 (624 aa)
     
 
  0.829
XP_008449579.1
Nucleolin (516 aa)
     
 
  0.822
XP_008437829.1
Heterogeneous nuclear ribonucleoprotein R isoform X1 (483 aa)
     
 
  0.822
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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