STRINGSTRING
XP_008438197.1 protein (Cucumis melo) - STRING interaction network
"XP_008438197.1" - Upstream activation factor subunit UAF30-like in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438197.1Upstream activation factor subunit UAF30-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (156 aa)    
Predicted Functional Partners:
XP_008450827.1
Protein arginine N-methyltransferase 1.1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family (401 aa)
     
 
  0.754
XP_008445261.1
Dentin sialophosphoprotein (910 aa)
     
   
  0.726
XP_008441363.1
Ribosome-recycling factor, chloroplastic (263 aa)
     
        0.719
XP_008457275.1
High mobility group B protein 15 (421 aa)
     
 
  0.669
XP_008452910.1
High mobility group B protein 9; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (324 aa)
     
 
  0.669
XP_008462001.1
Probable chromatin-remodeling complex ATPase chain (87 aa)
       
 
  0.621
XP_008458481.1
Putative chromatin-remodeling complex ATPase chain isoform X1 (1073 aa)
       
 
  0.621
XP_008442094.1
CDK5RAP3-like protein isoform X1 (557 aa)
           
  0.550
XP_008439008.1
Chromatin structure-remodeling complex protein BSH isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (240 aa)
     
 
  0.533
XP_008443548.1
Polyribonucleotide nucleotidyltransferase 2, mitochondrial; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (1026 aa)
     
        0.495
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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