STRINGSTRING
XP_008438215.1 protein (Cucumis melo) - STRING interaction network
"XP_008438215.1" - Brefeldin A-inhibited guanine nucleotide-exchange protein 5 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438215.1Brefeldin A-inhibited guanine nucleotide-exchange protein 5; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (1785 aa)    
Predicted Functional Partners:
XP_008463989.1
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (950 aa)
     
 
  0.769
XP_008441473.1
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1733 aa)
     
   
  0.763
XP_008438371.1
Uncharacterized protein LOC103483489; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 11 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns (368 aa)
           
  0.725
XP_008441554.1
Vacuolar protein sorting-associated protein 45 homolog isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns; Belongs to the STXBP/unc-18/SEC1 family (568 aa)
     
   
  0.712
XP_008439302.1
dnaJ protein ERDJ2A; Translocation protein SEC63 homolog (684 aa)
     
   
  0.667
XP_008463843.1
Receptor-like protein kinase HERK 1 (839 aa)
       
 
  0.638
XP_008442564.1
ADP-ribosylation factor GTPase-activating protein AGD7 (466 aa)
     
 
  0.635
XP_008458026.1
RPM1-interacting protein 4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (225 aa)
           
  0.627
XP_008449851.1
CBL-interacting serine/threonine-protein kinase 3 (444 aa)
       
 
  0.602
XP_008441050.1
Phosphatidylinositol 4-kinase beta 1; Belongs to the PI3/PI4-kinase family (1093 aa)
     
 
  0.600
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (7%) [HD]