STRINGSTRING
XP_008438223.1 protein (Cucumis melo) - STRING interaction network
"XP_008438223.1" - cyclin-U4-1 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438223.1cyclin-U4-1 (211 aa)    
Predicted Functional Partners:
XP_008448195.1
ultraviolet-B receptor UVR8-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (499 aa)
           
  0.671
XP_008466365.1
Uncharacterized protein LOC103503795 isoform X1 (2153 aa)
           
  0.616
XP_008440225.1
cyclin-H1-1 isoform X1; Belongs to the cyclin family (332 aa)
           
  0.589
XP_008461940.1
Uncharacterized protein LOC103500422; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns (1119 aa)
           
  0.549
XP_008450649.1
cyclin-L1-1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns; Belongs to the cyclin family (443 aa)
           
  0.526
XP_008466808.1
Probable plastid-lipid-associated protein 14, chloroplastic isoform X1 (664 aa)
       
 
  0.486
XP_008465726.1
Serine/threonine-protein kinase STN7, chloroplastic isoform X1 (580 aa)
       
 
  0.486
XP_008463312.1
Cell division control protein 2 homolog C; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (305 aa)
       
 
  0.486
XP_008463269.1
Serine/threonine-protein kinase STN8, chloroplastic (491 aa)
       
 
  0.486
XP_008458494.1
Cyclin-dependent kinase F-1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 4 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (482 aa)
       
 
  0.486
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (5%) [HD]