STRINGSTRING
XP_008438238.1 protein (Cucumis melo) - STRING interaction network
"XP_008438238.1" - RING-type E3 ubiquitin transferase in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438238.1RING-type E3 ubiquitin transferase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (681 aa)    
Predicted Functional Partners:
XP_008452546.1
Peroxisomal multifunctional enzyme type 2 isoform X1; Non-specific lipid-transfer protein-like (126 aa)
           
  0.704
XP_008437133.1
Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (777 aa)
           
  0.703
XP_008445209.1
UPF0481 protein At3g47200-like (448 aa)
           
  0.619
XP_008466102.1
Receptor-like protein kinase HAIKU2 (982 aa)
       
 
  0.611
XP_008463641.1
NAC domain-containing protein 89-like isoform X1 (367 aa)
           
  0.609
XP_008449939.1
NAC domain-containing protein 89 (487 aa)
           
  0.609
XP_008455813.1
Uncharacterized protein LOC103495913 (187 aa)
           
  0.562
XP_008442384.1
UPF0098 protein TC_0109; Uncharacterized protein LOC103486265 (167 aa)
           
  0.562
XP_008464496.1
Probable galactinol--sucrose galactosyltransferase 2 isoform X1 (813 aa)
           
  0.531
aga2
Probable galactinol--sucrose galactosyltransferase 2 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 23 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (772 aa)
           
  0.531
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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