STRINGSTRING
XP_008438285.1 protein (Cucumis melo) - STRING interaction network
"XP_008438285.1" - Metacaspase-1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438285.1Metacaspase-1 (367 aa)    
Predicted Functional Partners:
XP_008439499.1
Protein LSD1 (171 aa)
     
 
  0.808
XP_008457070.1
Protease Do-like 7 isoform X1 (1154 aa)
           
  0.584
XP_008451014.1
Calpain-type cysteine protease DEK1; Belongs to the peptidase C2 family (2162 aa)
     
   
  0.582
XP_008437131.1
Legumain (495 aa)
     
   
  0.571
XP_008464356.1
Staphylococcal nuclease domain-containing protein 1 (988 aa)
           
  0.565
XP_008466740.1
Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 isoform X1 (784 aa)
           
  0.563
XP_008439666.1
DNA-binding protein DDB_G0278111 (128 aa)
           
  0.554
XP_008448637.1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (115 aa)
           
  0.497
XP_008441684.1
Cysteine protease ATG4-like isoform X1 (483 aa)
     
   
  0.486
XP_008456989.1
TBC1 domain family member 15; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (655 aa)
     
   
  0.484
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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