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XP_008438300.1 protein (Cucumis melo) - STRING interaction network
"XP_008438300.1" - RING-H2 finger protein ATL52 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438300.1RING-H2 finger protein ATL52; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (380 aa)    
Predicted Functional Partners:
XP_008463092.1
Serine/threonine-protein phosphatase 7 long form homolog (165 aa)
     
   
  0.727
XP_008462269.1
25.3 kDa vesicle transport protein; Belongs to the synaptobrevin family (218 aa)
           
  0.525
XP_008460329.1
25.3 kDa vesicle transport protein-like; Belongs to the synaptobrevin family (218 aa)
           
  0.525
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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