STRINGSTRING
XP_008438322.1 protein (Cucumis melo) - STRING interaction network
"XP_008438322.1" - DNA repair protein RAD50 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438322.1DNA repair protein RAD50 (1316 aa)    
Predicted Functional Partners:
XP_008454628.1
Double-strand break repair protein MRE11 isoform X1; Belongs to the MRE11/RAD32 family (716 aa)
   
  0.999
XP_008457036.1
Nijmegen breakage syndrome 1 protein isoform X1; Nibrin isoform X1 (525 aa)
     
  0.996
XP_008447915.1
Serine/threonine-protein kinase ATR; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (2721 aa)
     
 
  0.961
XP_008453932.1
ATP-dependent DNA helicase 2 subunit KU70 (626 aa)
     
 
  0.961
XP_008449833.1
Structural maintenance of chromosomes protein 3 isoform X1 (1203 aa)
   
 
  0.958
XP_008438156.1
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase (691 aa)
     
 
  0.954
XP_008453086.1
Serine/threonine-protein kinase ATM isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (3009 aa)
     
 
  0.923
XP_008461344.1
Structural maintenance of chromosomes protein 5 isoform X2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 6 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (1053 aa)
   
 
  0.923
XP_008438434.1
Serine/threonine-protein kinase ATM-like isoform X1 (597 aa)
     
 
  0.909
XP_008447232.1
Structural maintenance of chromosomes protein 1 (1219 aa)
   
 
  0.906
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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