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XP_008438347.1 protein (Cucumis melo) - STRING interaction network
"XP_008438347.1" - Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 62 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438347.1Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 62 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns (105 aa)    
Predicted Functional Partners:
XP_008467005.1
Probable prefoldin subunit 5 (91 aa)
     
        0.866
XP_008462580.1
Probable small nuclear ribonucleoprotein G (80 aa)
     
        0.866
XP_008458371.1
60S ribosomal protein L29-1-like; Belongs to the eukaryotic ribosomal protein eL29 family (61 aa)
     
        0.866
XP_008458370.1
60S ribosomal protein L29-1; Belongs to the eukaryotic ribosomal protein eL29 family (61 aa)
     
        0.866
XP_008447412.1
H/ACA ribonucleoprotein complex subunit 3-like protein (64 aa)
     
        0.866
XP_008446044.1
Probable signal peptidase complex subunit 1 (93 aa)
     
        0.866
XP_008437670.1
Uncharacterized protein LOC103483010; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 1 Protein, and 59% coverage of the annotated genomic feature by RNAseq alignments (181 aa)
     
        0.866
XP_008456558.1
DNA-directed RNA polymerases I, II, and III subunit RPABC5; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 26 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns (71 aa)
     
        0.838
XP_008446194.1
DNA-directed RNA polymerase subunit 10-like protein (71 aa)
     
        0.838
XP_008456611.1
40S ribosomal protein S17-3 (141 aa)
     
        0.836
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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