STRINGSTRING
XP_008438362.1 protein (Cucumis melo) - STRING interaction network
"XP_008438362.1" - Ubiquitinyl hydrolase 1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438362.1Ubiquitinyl hydrolase 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (979 aa)    
Predicted Functional Partners:
XP_008463451.1
Uncharacterized protein LOC103501618; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (1202 aa)
     
      0.871
XP_008454623.1
Ubiquitin carboxyl-terminal hydrolase 14 isoform X1 (812 aa)
     
   
  0.821
XP_008455316.1
Two pore calcium channel protein 1B isoform X1 (743 aa)
     
   
  0.793
XP_008451162.1
Vacuolar protein sorting-associated protein 27 (279 aa)
     
        0.762
XP_008439938.1
Uncharacterized protein LOC103484575; Myosin-11 (1257 aa)
     
        0.762
XP_008459685.1
Ubiquitin carboxyl-terminal hydrolase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 9 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns (333 aa)
     
   
  0.749
XP_008457685.1
E3 ubiquitin-protein ligase UPL3 (1892 aa)
       
 
  0.718
XP_008442639.1
E3 ubiquitin-protein ligase UPL4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns (1515 aa)
       
 
  0.718
XP_008463627.1
U4/U6.U5 tri-snRNP-associated protein 2-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (550 aa)
     
 
  0.709
XP_008453765.1
UBP1-associated protein 2B-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (347 aa)
       
 
  0.709
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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