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XP_008438365.1 protein (Cucumis melo) - STRING interaction network
"XP_008438365.1" - 60S ribosomal protein L13a-2-like in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438365.160S ribosomal protein L13a-2-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 48 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns; Belongs to the universal ribosomal protein uL13 family (206 aa)    
Predicted Functional Partners:
XP_008459594.1
40S ribosomal protein S9-2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 43 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns; Belongs to the universal ribosomal protein uS4 family (197 aa)
 
 
  0.986
XP_008446334.1
40S ribosomal protein S9-2 (197 aa)
 
 
  0.986
XP_008463090.1
60S ribosomal protein L3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 46 ESTs, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns; Belongs to the universal ribosomal protein uL3 family (389 aa)
   
 
  0.986
XP_008445969.1
60S ribosomal protein L3-2; Belongs to the universal ribosomal protein uL3 family (388 aa)
   
 
  0.986
XP_008456941.1
40S ribosomal protein S26; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 13 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns; Belongs to the eukaryotic ribosomal protein eS26 family (129 aa)
   
 
  0.985
XP_008456772.1
40S ribosomal protein S26-3-like; Belongs to the eukaryotic ribosomal protein eS26 family (129 aa)
   
 
  0.985
XP_008454581.1
60S ribosomal protein L8 (260 aa)
   
 
  0.985
XP_008440805.1
60S ribosomal protein L8-3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 19 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns (260 aa)
   
 
  0.985
XP_008462316.1
40S ribosomal protein S3-3; Belongs to the universal ribosomal protein uS3 family (237 aa)
   
 
  0.985
XP_008459686.1
40S ribosomal protein S3-2; Belongs to the universal ribosomal protein uS3 family (243 aa)
   
 
  0.985
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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