STRINGSTRING
XP_008438371.1 protein (Cucumis melo) - STRING interaction network
"XP_008438371.1" - Uncharacterized protein LOC103483489 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438371.1Uncharacterized protein LOC103483489; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 11 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns (368 aa)    
Predicted Functional Partners:
XP_008461354.1
Pheophytinase, chloroplastic (499 aa)
           
  0.758
XP_008438215.1
Brefeldin A-inhibited guanine nucleotide-exchange protein 5; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (1785 aa)
           
  0.725
XP_008453501.1
Uncharacterized protein LOC103494195 isoform X1 (1088 aa)
           
  0.617
XP_008463843.1
Receptor-like protein kinase HERK 1 (839 aa)
           
  0.613
PSY
Phytoene synthase, chloroplastic; Catalyzes the reaction from prephytoene diphosphate to phytoene (421 aa)
           
  0.587
XP_008439573.1
Photosystem I reaction center subunit psaK, chloroplastic (130 aa)
           
  0.587
PSY3
Phytoene synthase 2, chloroplastic-like (388 aa)
           
  0.581
XP_008439151.1
Uncharacterized protein LOC103484033; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 6 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (244 aa)
           
  0.562
XP_008466501.1
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (949 aa)
           
  0.561
XP_008438653.1
Protein CDC73 homolog; Parafibromin (407 aa)
           
  0.485
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (7%) [HD]